Publications

1. Chia, K.-S., Kourelis, J., Vickers, M., Sakai, T., Kamoun, S., & Carella, P. (2022). The N-terminal executioner domains of NLR immune receptors are functionally conserved across major plant lineages. BioRxiv, 2022.10.19.512840. https://doi.org/10.1101/2022.10.19.512840
2. Kourelis, J., Contreras, M. P., Harant, A., Pai, H., Lüdke, D., Adachi, H., Derevnina, L., Wu, C.-H., & Kamoun, S. (2022). The helper NLR immune protein NRC3 mediates the hypersensitive cell death caused by the cell-surface receptor Cf-4. PLOS Genetics, 18(9), e1010414-. https://doi.org/10.1371/journal.pgen.1010414
3. de la Concepcion, J. C., Fujisaki, K., Bentham, A. R., Cruz Mireles, N., Sanchez de Medina Hernandez, V., Shimizu, M., Lawson, D. M., Kamoun, S., Terauchi, R., & Banfield, M. J. (2022). A blast fungus zinc-finger fold effector binds to a hydrophobic pocket in host Exo70 proteins to modulate immune recognition in rice. Proceedings of the National Academy of Sciences, 119(43), e2210559119. https://doi.org/10.1073/pnas.2210559119
4. Takeda, T., Takahashi, M., Shimizu, M., Sugihara, Y., Yamashita, T., Saitoh, H., Fujisaki, K., Ishikawa, K., Utsushi, H., Kanzaki, E., Sakamoto, Y., Abe, A., & Terauchi, R. (2022). Rice apoplastic CBM1-interacting protein counters blast pathogen invasion by binding conserved carbohydrate binding module 1 motif of fungal proteins. PLOS Pathogens, 18(9), e1010792-. https://doi.org/10.1371/journal.ppat.1010792
5. Lin, X., Olave-Achury, A., Heal, R., Pais, M., Witek, K., Ahn, H.-K., Zhao, H., Bhanvadia, S., Karki, H. S., Song, T., Wu, C., Adachi, H., Kamoun, S., Vleeshouwers, V. G. A. A., & Jones, J. D. G. (2022). A potato late blight resistance gene protects against multiple Phytophthora species by recognizing a broadly conserved RXLR-WY effector. Molecular Plant. https://doi.org/https://doi.org/10.1016/j.molp.2022.07.012
6. Natsume, S., Sugihara, Y., Kudoh, A., Oikawa, K., Shimizu, M., Ishikawa, Y., Nishihara, M., Abe, A., Innan, H., & Terauchi, R. (2022). Genome Analysis Revives a Forgotten Hybrid Crop Edo-dokoro in the Genus Dioscorea. Plant and Cell Physiology, pcac109. https://doi.org/10.1093/pcp/pcac109
7. Sugihara, Y., Abe, Y., Takagi, H., Abe, A., Shimizu, M., Ito, K., Kanzaki, E., Oikawa, K., Kourelis, J., Langner, T., Win, J., Białas, A., Lüdke, D., Chuma, I., Saitoh, H., Kobayashi, M., Zheng, S., Tosa, Y., Banfield, M. J., Kamoun, S., Terauchi, R., Fujisaki, K. (2022). Tangled gene-for-gene interactions mediate co-evolution of the rice NLR immune receptor Pik and blast fungus effector proteins. BioRxiv, 2022.07.19.500555. https://doi.org/10.1101/2022.07.19.500555
8. Shimizu, M., Hirabuchi, A., Sugihara, Y., Abe, A., Takeda, T., Kobayashi, M., Hiraka, Y., Kanzaki, E., Oikawa, K., Saitoh, H., Thorsten, L., J, B. M., Kamoun, S. & Terauchi, R. (2022). A genetically linked pair of NLR immune receptors shows contrasting patterns of evolution. Proceedings of the National Academy of Sciences, 119(27), e2116896119. https://doi.org/10.1073/pnas.2116896119 京大プレスリリース
9. de la Concepcion, J. C., Fujisaki, K., Bentham, A. R., Cruz Mireles, N., Sanchez de Medina Hernandez, V., Shimizu, M., Lawson, D. M., Kamoun, S., Terauchi, R., & Banfield, M. J. (2022). Binding of a blast fungus Zinc-finger fold effector to a hydrophobic pocket in the host exocyst subunit Exo70 modulates immune recognition in rice. BioRxiv, 2022.06.18.496527. https://doi.org/10.1101/2022.06.18.496527
10. Maidment, J. H. R., Shimizu, M., Vera, S., Franceschetti, M., Longya, A., Stevenson, C. E. M., de la Concepcion, J. C., Bialas, A., Kamoun, S., Terauchi, R., & Banfield, M. J. (2022). Effector target-guided engineering of an integrated domain expands the disease resistance profile of a rice NLR immune receptor. BioRxiv, 2022.06.14.496076. https://doi.org/10.1101/2022.06.14.496076
11. Natsume, S., Yaegashi, H., Sugihara, Y., Abe, A., Shimizu, M., Oikawa, K., White, B., Kudoh, A., & Terauchi, R. (2022). Whole genome sequencing of a wild yam species Dioscorea tokoro reveals a genomic region associated with sex. BioRxiv, 2022.06.11.495741. https://doi.org/10.1101/2022.06.11.495741
12. Kato, H., Nemoto, K., Shimizu, M., Abe, A., Asai, S., Ishihama, N., Matsuoka, S., Daimon, T., Ojika, M., Kawakita, K., Onai, K., Shirasu, K., Yoshida, M., Ishiura, M., Takemoto, D., Takano, Y., & Terauchi, R. (2022). Recognition of pathogen-derived sphingolipids in Arabidopsis. Science, 376(6595), 857–860. https://doi.org/10.1126/science.abn0650
13. Kobayashi, M., Utsushi, H., Fujisaki, K., Takeda, T., Yamashita, T., & Terauchi, R. (2022). A jacalin-like lectin domain-containing protein of Sclerospora graminicola acts as an apoplastic virulence effector in plant–oomycete interactions. Molecular Plant Pathology, n/a(n/a). https://doi.org/https://doi.org/10.1111/mpp.13197
14. Moghaddam, M., Ohta, A., Shimizu, M., Terauchi, R., & Kazempour-Osaloo, S. (2022). The complete chloroplast genome of Onobrychis gaubae (Fabaceae-Papilionoideae): comparative analysis with related IR-lacking clade species. BMC Plant Biology, 22(1), 75. https://doi.org/10.1186/s12870-022-03465-4
15. Takeda, T., Takahashi, M., Shimizu, M., Sugihara, Y., Saitoh, H., Fujisaki, K., Ishikawa, K., Utsushi, H., Kanzaki, E., Sakamoto, Y., Abe, A., & Terauchi, R. (2022). Apoplastic CBM1-interacting proteins bind conserved carbohydrate binding module 1 motifs in fungal hydrolases to counter pathogen invasion. BioRxiv, 2021.12.31.474618. https://doi.org/10.1101/2021.12.31.474618

1. Kourelis, J., & Adachi, H. (2022). Activation and Regulation of NLR Immune Receptor Networks. Plant and Cell Physiology, pcac116. https://doi.org/10.1093/pcp/pcac116
2. Adachi, H., & Kamoun, S. (2022). NLR receptor networks in plants. Essays in Biochemistry, EBC20210075. https://doi.org/10.1042/EBC20210075

* Presenter

1. Ryohei Terauchi*. Molecular interactions between rice NLRs and Magnaporthe effectors. 12th Japan-US Seminar in Plant Pathology. Cornell University, US, August, 2022 ※Keynote lecture
2. Hiroaki Adachi*. An atypical NLR modulates the NLR network in Nicotiana benthamiana (Oral presentation). 12th Japan-US Seminar in Plant Pathology. Cornell University, US, August, 2022

* Presenter

1. 工藤葵*, 杉原優, 太田敦士, 寺内良平. 上向きのオスと下向きのメス：雌雄異株植物オニドコロのオス花序は青色光に応答する (ポスター). 挑戦的両性花原理領域 若手の会, 2022年10月 ※ポスター賞およびAI賞（ダブル受賞）
2. 太田敦士*. Aegilops Sitopsis節二倍体野生種における芒関連遺伝子マッピング (口頭発表). 麦学セミナー, オンライン, 2022年10月
3. 堺俊之, 寺内良平, 阿部陽. イネNAM集団を用いたGenomic Predictionモデルの構築および育種への応用 (口頭発表). 日本育種学会第142回講演会, 帯広畜産大学、2022年9月 ※日本育種学会優秀発表賞
4. 工藤葵, 杉原優, 太田敦士, 寺内良平. Upright male and pendente female: effects of pollinators and seed eater in inflorescence angle of Dioscorea tokoro (口頭発表). 第69回日本生態学会, オンライン, 2022年3月
5. 工藤葵, 杉原優, 太田敦士, 寺内良平. 上向きのオスと下向きのメス：雌雄異株植物オニドコロの花序角度と送粉効率・種子被食率の関係 (ポスター). 日本植物分類学会第21回大会, オンライン, 2022年3月
6. 細井早菜子*, 富田淳, 村川未果, 前田麻友子, 山根京子, 太田敦士. コムギ, エギロプス属エマルジナータ亜節４種における側芒抑制候補遺伝子C2H2-ZFの塩基配列多型および発現解析 (口頭発表). 日本育種学会第141回講演会, オンライン, 2022年3月

1. Kourelis J, Sakai T, Adachi H, Kamoun S (2021) RefPlantNLR is a comprehensive collection of experimentally validated plant disease resistance proteins from the NLR family. PLoS Biol 19(10): e3001124.
2. Kato, H., Nemoto, K., Shimizu, M., Abe, A., Asai, S., Ishihama, N., Daimon, T., Ojika, M., Kawakita, K., Onai, K., Shirasu, K., Ishiura, M., Takemoto, D., Takano, Y. and Terauchi, R. (2021). Pathogen-derived 9-methyl sphingoid base is perceived by a lectin receptor kinase in Arabidopsis. BioRxiv, 2021.10.18.464766. https://doi.org/10.1101/2021.10.18.464766
3. Monjil, M. S., Kato, H., Matsuda, K., Suzuki, N., Tenhiro, S., Camagna, M., Suzuki, T., Tanaka, A., Terauchi, R., Sato, I., Chiba, S., Kawakita, K., Ojika, M. and Takemoto, D. (2021). Two structurally different oomycete MAMPs induce distinctive plant immune responses. BioRxiv, 2021.10.22.465218. https://doi.org/10.1101/2021.10.22.465218
4. Adeline Harant, Hsuan Pai, Toshiyuki Sakai, Sophien Kamoun, Hiroaki Adachi. (2021) A vector system for fast-forward studies of the HOPZ-ACTIVATED RESISTANCE1 (ZAR1) resistosome in the model plant Nicotiana benthamiana. Plant Physiology, kiab471
5. Białas, A., Langner, T., Harant, A., Contreras, M. P., Stevenson, C. E. M., Lawson, D. M., …, Terauchi, R., Banfield, M. J. & Kamoun, S. (2021). Two NLR immune receptors acquired high-affinity binding to a fungal effector through convergent evolution of their integrated domain. ELife, 10, e66961. https://doi.org/10.7554/eLife.66961
6. Shimizu, M., Hirabuchi, A., Sugihara, Y., Abe, A., Takeda, T., Kobayashi, M., … Terauchi, R. (2021). A genetically linked pair of NLR immune receptors show contrasting patterns of evolution. BioRxiv, 2021.09.01.458560. https://doi.org/10.1101/2021.09.01.458560
7. Pingtao Ding, Toshiyuki Sakai, Ram Krishna Shrestha, Nicolas Manosalva Perez, Wenbin Guo, Bruno Pok Man Ngou, Shengbo He, Chang Liu, Xiaoqi Feng, Runxuan Zhang, Klaas Vandepoele, Dan MacLean, Jonathan D G Jones. (2021) Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors. Journal of Experimental Botany, erab373
8. Toshiyuki Sakai, Abe, A., Shimizu, M., Terauchi, R. (2021). RIL-StEp: epistasis analysis of rice recombinant inbred lines (RILs) reveals candidate interacting genes that control seed hull color and leaf chlorophyll content. G3 Genes|Genomes|Genetics, https://doi.org/10.1093/g3journal/jkab130
9. De la Concepcion, J. C., Benjumea, J. V., Białas, A., Terauchi, R., Kamoun, S., & Banfield, M. J. (2021). Functional diversification gave rise to allelic specialization in a rice NLR immune receptor pair. eLife, 2021;10:e71662. https://doi.org/10.7554/eLife.71662
10. Bentham, A. R., Petit-Houdenot, Y., Win, J., Chuma, I., Terauchi, R., Banfield, M. J., … Langner, T. (2021). A single amino acid polymorphism in a conserved effector of the multihost blast fungus pathogen expands host-target binding spectrum. PLOS Pathogens 17(11): e1009957. https://doi.org/10.1101/2021.03.15.435478
11. Mutoh, R., Iwata, K., Iida, T., Ishiura, M., & Onai, K. (2021). Rhythmic adenosine triphosphate release from the cyanobacterial circadian clock protein KaiC revealed by real‐time monitoring of bioluminescence using firefly luciferase. Genes to Cells, 26(2), 83-93.

1. Sugihara, Y., Kudoh, A., Oli, M. T., Takagi, H., Natsume, S., Shimizu, M., Abe, A., Asiedu, R., Asfaw, A., Adebola, R. & Terauchi, R. (2021). Population Genomics of Yams: Evolution and Domestication of Dioscorea Species. In: Population Genomics. Springer, Cham. https://doi.org/10.1007/13836_2021_94

1. Yu Sugihara, Kwabena Darkwa, Hiroki Yaegashi, Satoshi Natsume, Motoki Shimizu, Akira Abe, Akiko Hirabuchi, Kazue Ito, Kaori Oikawa, Muluneh Tamiru-Oli, Atsushi Ohta, Ryo Matsumoto, Agre Paterne, David De Koeyer, Babil Pachakkil, Shinsuke Yamanaka, Satoru Muranaka, Hiroko Takagi, Ben White, Robert Asiedu, Hideki Innan, Asrat Asfaw, Patrick Adebola, Ryohei Terauchi (2020). Genome Analyses Reveal the Hybrid Origin of the Staple Crop White Guinea Yam (Dioscorea rotundata). PNAS, 117 (50) 31987-31992; DOI: 10.1073/pnas.2015830117.
2. Oikawa, K., Fujisaki, K., Shimizu, M., Takeda, T., Saitoh, H., Hirabuchi, A., … Terauchi, R. (2020). The blast pathogen effector AVR-Pik binds and stabilizes rice heavy metal-associated (HMA) proteins to co-opt their function in immunity. BioRxiv, 2020.12.01.406389. https://doi.org/10.1101/2020.12.01.406389
3. Kato, H., Onai, K., Abe, A., Shimizu, M., Takagi, H., Tateda, C., Utsushi, H., Singkarabanit-Ogawa, S., Kitakura, S., Ono, E., Zipfel, C., Takano, Y., Ishiura, M., Terauchi, R. (2020). Lumi-Map, a real-time luciferase bioluminescence screen of mutants combined with MutMap, reveals Arabidopsis genes involved in PAMP-triggered immunity. Molecular Plant-Microbe Interactions, https://doi.org/10.1094/MPMI-05-20-0118-TA.

1. Shimizu, M., Nakano, Y., Hirabuchi, A., Yoshino, K., Kobayashi, M., Yamamoto, K., Terauchi, R., & Saitoh, H. (2019). RNA‐Seq of in planta‐expressed Magnaporthe oryzae genes identifies MoSVP as a highly expressed gene required for pathogenicity at the initial stage of infection. Molecular plant pathology, 20(12), 1682-1695.
2. Seto, Y., Yasui, R., Kameoka, H., Tamiru, M., Cao, M., Terauchi, R., … & Yamaguchi, S. (2019). Strigolactone perception and deactivation by a hydrolase receptor DWARF14. Nature communications, 10(1), 1-10.
3. Tanaka, N., Yoshida, S., Takagi, H., Terauchi, R., Shimizu, A., & Fujiwara, T. (2019). Evidence for rice heading date 16 contribution to yield increase under low-nutrient conditions. Soil Science and Plant Nutrition, 65(6), 589-597.
4. Itoh, N., Segawa, T., Tamiru, M., Abe, A., Sakamoto, S., Uemura, A., … Terauchi, R. & Takagi, H. (2019). Next-generation sequencing-based bulked segregant analysis for QTL mapping in the heterozygous species Brassica rapa. Theoretical and Applied Genetics, 132(10), 2913-2925.
5. Takagi, M., Hamano, K., Takagi, H., Morimoto, T., Akimitsu, K., Terauchi, R., … & Ichimura, K. (2019). Disruption of the MAMP-induced MEKK1-MKK1/MKK2-MPK4 pathway activates the TNL immune receptor SMN1/RPS6. Plant and Cell Physiology, 60(4), 778-787.
6. Valent, B., Farman, M., Tosa, Y., Begerow, D., Fournier, E., Gladieux, P., … Terauchi, R., Tharreau, D., & Zhang, N. (2019). Pyricularia graminis‐tritici is not the correct species name for the wheat blast fungus: response to Ceresini et al.(MPP 20: 2). Molecular plant pathology, 20(2), 173.
7. Irieda, H., Inoue, Y., Mori, M., Yamada, K., Oshikawa, Y., Saitoh, H., Uemura, A., Terauchi, R., … & Takano, Y. (2019). Conserved fungal effector suppresses PAMP-triggered immunity by targeting plant immune kinases. Proceedings of the National Academy of Sciences, 116(2), 496-505.

1. De la Concepcion, J. C., Franceschetti, M., Maqbool, A., Saitoh, H., Terauchi, R., Kamoun, S., & Banfield, M. J. (2018). Polymorphic residues in rice NLRs expand binding and response to effectors of the blast pathogen. Nature plants, 4(8), 576.

1. Białas, A., Zess, E. K., De la Concepcion, J. C., Franceschetti, M., Pennington, H. G., Yoshida, K., …, Terauchi, R., Banfield, M., & Kamoun, S. (2018). Lessons in effector and NLR biology of plant-microbe systems. Molecular Plant-Microbe Interactions, 31(1), 34-45.

1. Kobayashi, M., Hiraka Y., Abe, A., Yaegashi, H., Natsume, S., Kikuchi, H., Takagi, H., Saitoh, H., Win, J., Kamoun, S., Terauchi, R. (2017) Genome analysis of the foxtail millet pathogen Sclerospora graminicola reveals the complex effector repertoire of graminicolous downy mildews. BMC Genomics 18:897
2. Tamiru, M., Natsume, S., Takagi, Hiroki, White, B., Yaegashi, H., Shimizu, M., Yoshida, K., Uemura, A., Oikawa, K., Abe, A., Urasaki, N., Matsumura, H., Babil, P., Yamanaka, S., Matsumoto, R., Muranaka, S., Girma, G., Lopez-Montes, A., Gedil, M., Bhattacharjee, R., Abberton, M., Kumar, L., Rabbi, I., Tsujimura, M., Terachi, T., Haerty, W., Corpas, M., Kamoun, S., Kahl, G., Takagi, Hiroko, Asiedu, R., Terauchi, R. (2017). Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination. BMC biology, 15(1), 86.
3. Inoue, Y., Vy, T. T., Yoshida, K., Asano, H., Mitsuoka, C., Asuke, S., Anh, V., Cumagun, C., Chuma, I., Terauchi, R., Kato, K., Mitchell, T., Valent, B., Farman, M., Tosa, Y. (2017). Evolution of the wheat blast fungus through functional losses in a host specificity determinant. Science, 357(6346), 80-83.
4. Wu, C. H., Abd-El-Haliem, A., Bozkurt, T. O., Belhaj, K., Terauchi, R., Vossen, J. H., & Kamoun, S. (2017). NLR network mediates immunity to diverse plant pathogens. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 114(30), 8113-8118.

1. Bialas, A., Zess, E., De la Concepcion JC., Franceschetti, M., Pennington, HG., Yoshida, K., Uson, JL., Chanced, E., Wu, C.-H., Languor, T., Maqbool, A., Varden, FA., Derevnina, L., Belhaj, K., Fujisaki, K., Saitoh, H., Terauchi, R., Banfield, M., Kamoun, S. (2017) Lessons in Effector and NLR Biology of Plant-Microbe Systems. Molecular Plant-Microbe Interactions DOI10.1094/MPMI-08-17-0196-FI.

1. Yasui, Y., Hirakawa, H., Oikawa, T., Toyoshima, M., Matsuzaki, C., Ueno, M., Mizuno, N., Nagatoshi, Y., Imamura, T., Miyago, M., Tanaka, K., Mise, K., Tanaka, T., Mizukoshi, H., Mori, M., Fujita, Y. (2016) Draft genome sequence of an inbred line of Chenopodium quinoa, an allotetraploid crop with great environmental adaptability and outstanding nutritional properties. DNA Research, 23(6): 535-546.
2. Ohta A., Yamane K., Kawahara T. (2017) Relationship between spike morphology and habitat of four Aegilops species of section Sitopsis. Genetic Resources and Crop Evolution, 64(5): 889-899. [First Online: 28 April 2016].
3. Yasui, Y., Hirakawa, H., Ueno, M., Matsui, K., Katsube-Tanaka, T., Yang, S. J., Aii, J., Sato, S., Mori, M. (2016) Assembly of the draft genome of buckwheat and its applications in identifying agronomically useful genes. DNA Research, 23(3): 215-224.